PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g037080.1
Common NameMTR_5g037080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 315aa    MW: 34099.1 Da    PI: 9.7825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g037080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + +q G+g+W+ I+r + k+Rt+ q+ s+ qky
  Medtr5g037080.1 103 PWTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKY 147
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614720IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.53296152IPR017930Myb domain
SuperFamilySSF466895.98E-1798151IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-1799150IPR006447Myb domain, plants
SMARTSM007172.7E-10100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-11102147IPR009057Homeodomain-like
CDDcd001672.91E-9103148No hitNo description
PfamPF002492.9E-11103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSLSRTCSQC GNNGHNSRTC NDGGEEKSIM IFGVRLTGGN NHLNTTTTNT TINNSFRKSA  60
SMTNLSQYEQ PPPQDSNPAD AGYVSDDIVH ASGRSRERKR GVPWTEEEHK LFLLGLQQVG  120
KGDWRGISRN FVKTRTPTQV ASHAQKYFLR RHNQNRRRRR SSLFDITTDT VMEPSTIMED  180
DQFQQETVVP LPPPTPAAYP SSHYGGIPGT PFPMGLGPVT LPVMSAERVA KPIRPTPMLP  240
PSSKMANLNL KDKASSSSIE PFPLSLKLQP SPPSEDHSPE SSGHSSSSAS SSTFKTMAAG  300
KYNGGGGDSI ISVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.3770.0pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0524750.0BT052475.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-E-11 unknown mRNA.
GenBankBT1335170.0BT133517.1 Medicago truncatula clone JCVI-FLMt-17C2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613473.10.0MYB-like transcription factor family protein
SwissprotQ2V9B02e-47MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLG7K6Z90.0G7K6Z9_MEDTR; MYB-like transcription factor family protein
STRINGGLYMA02G03020.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.25e-71MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]